transcriptomics topic

An interactive explorer for single-cell transcriptomics data

chanzuckerberg

Single-cell analysis in Python. Scales to >1M cells.

scverse

Fusing Histology and Genomics via Deep Learning - IEEE TMI

mahmoodlab

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

opencobra

Brings bulk and pseudobulk transcriptomics to the tidyverse

stemangiola

Identification of differential RNA modifications from nanopore direct RNA sequencing

GoekeLab

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

ZJUFanLab

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regula...

aertslab

Single cell perturbation prediction

theislab

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

kharchenkolab