transcription-factors topic
CENTIPEDE.tutorial
:bug: How to use CENTIPEDE to determine if a transcription factor is bound.
pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regula...
MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline
tftargets
:dart: Human transcription factor target genes from 6 databases in convenient R format.
tf-bind-transformer
A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
netZooR
netZooR is a network biology package implemented in R.
netZooPy
netZooPy is a network biology package implemented in Python.
netbooks
Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
netZooC
netZooC is a network biology package implemented in C.
netZooM
netZooM is a network biology package implemented in MATLAB.