rna-seq topic
slamdunk
Streamlining SLAM-seq analysis with ultra-high sensitivity
poreplex
A versatile sequenced read processor for nanopore direct RNA sequencing
nichenetr
NicheNet: predict active ligand-target links between interacting cells
zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
RNAseq-workflow
A repository for setting up a RNAseq workflow
mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
scCATCH
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
deepTools
Tools to process and analyze deep sequencing data.