Results 8 repositories owned by Kharchenko Lab

conos

189
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38
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R package for the joint analysis of multiple single-cell RNA-seq datasets

pagoda2

192
Stars
46
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R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

Baysor

136
Stars
26
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Bayesian Segmentation of Spatial Transcriptomics Data

dropEst

84
Stars
43
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Pipeline for initial analysis of droplet-based single-cell RNA-seq data

numbat

161
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23
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Haplotype-aware CNV analysis from single-cell RNA-seq

cacoa

43
Stars
6
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Single-cell Case Control Analysis

scITD

34
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0
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Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition

vrnmf

18
Stars
4
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Volume-regularized NMF