aertslab

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regula...

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cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

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Fast visualization tool for large-scale and high dimensional single-cell data

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A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.

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AUCell: score single cells with gene regulatory networks

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Create cisTarget databases

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GENIE3 (GEne Network Inference with Ensemble of trees) R-package

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pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.

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RcisTarget: Transcription factor binding motif enrichment

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SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

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