marker-genes topic

List marker-genes repositories

scCATCH

205
Stars
36
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Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

clustifyr

102
Stars
14
Forks
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Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

COSGR

47
Stars
9
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Accurate and fast cell marker gene identification with COSG

NSForest

50
Stars
16
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A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing

scGate

88
Stars
12
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marker-based purification of cell types from single-cell RNA-seq datasets

CyteType

94
Stars
16
Forks
94
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Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

CyteTypeR

24
Stars
0
Forks
24
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Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data