single-cell-rna-seq topic

CellRank: dynamics from multi-view single-cell data

theislab

Deep probabilistic analysis of single-cell and spatial omics data

scverse

NicheNet: predict active ligand-target links between interacting cells

saeyslab

R toolkit for single cell genomics

satijalab

Spatial Single Cell Analysis in Python

scverse

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

COMBINE-lab

Table of software for the analysis of single-cell RNA-seq data.

scRNA-tools

R package for the joint analysis of multiple single-cell RNA-seq datasets

kharchenkolab

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

kharchenkolab

Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

dtm2451