constraint-based-modeling topic
cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
COBRA.jl
High-level, high-performance, constraint-based reconstruction and analysis in Julia
ssbio
A Python framework for structural systems biology
RAVEN
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
PyCSP3
A Python Library for modeling combinatorial constrained problems
Safe-PDP
Safe Pontryagin Differentiable Programming (Safe PDP) is a new theoretical and algorithmic safe differentiable framework to solve a broad class of safety-critical learning and control tasks.
COBRA.tutorials
Repository of tutorials for The COBRA Toolbox
embl_gems
EMBL GEMs: A collection of GEnome-scale Models for bacterial species
Escher.jl
Visualization of metabolic models in Makie.
COBREXA.jl
Constraint-Based Reconstruction and EXascale Analysis