anndata topic
scanpy
Single-cell analysis in Python. Scales to >1M cells.
muon
muon is a multimodal omics Python framework
anndata
Annotated data.
Seurat-to-RNA-Velocity
A guide to using a Seurat object in conjunction with RNA Velocity
SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
mudata
Multimodal Data (.h5mu) implementation for Python
rapids_singlecell
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
cirrocumulus
Bring your single-cell data to life
MuDataSeurat
.h5mu files interface for Seurat