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anndata repositories
scanpy
1.8k
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Single-cell analysis in Python. Scales to >1M cells.
muon
200
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28
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muon is a multimodal omics Python framework
anndata
509
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148
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Annotated data.
Seurat-to-RNA-Velocity
126
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26
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A guide to using a Seurat object in conjunction with RNA Velocity
SCP
312
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66
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An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
mudata
68
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16
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Multimodal Data (.h5mu) implementation for Python
rapids_singlecell
93
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17
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Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
cirrocumulus
65
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10
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Bring your single-cell data to life
MuDataSeurat
21
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7
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.h5mu files interface for Seurat