gap-filling topic
RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
gapseq
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
RAVEN
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
dentist
Close assembly gaps using long-reads at high accuracy.
GALA
Long-reads Gap-free Chromosome-scale Assembler
KEMET
KEGG Module Evaluation Tool
RGISTools
Tools for Downloading, Customizing, and Processing Time Series of Satellite Images from Landsat, MODIS, and Sentinel
HANTS-GEE
A scalable implimentation of HANTS for time sereis reconstruction in remote sensing on Google Earth Engine platform
Gap2Seq
Gap2Seq is a gap filling and insertion genotyping tool.