gap-filling topic

List gap-filling repositories

RagTag

437
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44
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Tools for fast and flexible genome assembly scaffolding and improvement

cobratoolbox

238
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304
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The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

gapseq

146
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28
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Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

RAVEN

97
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52
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The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

dentist

47
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6
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Close assembly gaps using long-reads at high accuracy.

GALA

67
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14
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Long-reads Gap-free Chromosome-scale Assembler

RGISTools

51
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15
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Tools for Downloading, Customizing, and Processing Time Series of Satellite Images from Landsat, MODIS, and Sentinel

HANTS-GEE

40
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5
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A scalable implimentation of HANTS for time sereis reconstruction in remote sensing on Google Earth Engine platform

Gap2Seq

17
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6
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Gap2Seq is a gap filling and insertion genotyping tool.