variant-calling topic
List
variant-calling repositories
rnavar
31
Stars
29
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gatk4 RNA variant calling pipeline
vcfdist
67
Stars
5
Forks
Watchers
vcfdist: Accurately benchmarking phased variant calls
nPoRe
16
Stars
0
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nPoRe: n-Polymer Realigner for improved pileup-based variant calling
variant-calling-pipeline-gatk4
48
Stars
47
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Variant Calling Pipeline Using GATK4 and Nextflow
BALSAMIC
43
Stars
17
Forks
Watchers
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
PopDel
33
Stars
2
Forks
Watchers
Population-wide Deletion Calling
Imputation_beagle_tutorial
26
Stars
2
Forks
Watchers
Imputation-beagle-tutorial
rMETL
15
Stars
3
Forks
Watchers
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
indelope
39
Stars
1
Forks
Watchers
find large indels (in the blind spot between GATK/freebayes and SV callers)
uncovar
20
Stars
5
Forks
Watchers
Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.