structural-variation topic
Circle-Map
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
Sniffles
Structural variation caller using third generation sequencing
arriba
Fast and accurate gene fusion detection from RNA-Seq data
paragraph
Graph realignment tools for structural variants
truvari
Structural variant toolkit for VCFs
delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
manta
Structural variant and indel caller for mapped sequencing data
smoove
structural variant calling and genotyping with existing tools, but, smoothly.
cuteSV
Long read based human genomic structural variation detection with cuteSV
svtools
Tools for processing and analyzing structural variants.