structural-variation topic

List structural-variation repositories

Circle-Map

60
Stars
18
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A method for circular DNA detection based on probabilistic mapping of ultrashort reads

Sniffles

517
Stars
87
Forks
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Structural variation caller using third generation sequencing

arriba

211
Stars
50
Forks
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Fast and accurate gene fusion detection from RNA-Seq data

paragraph

145
Stars
28
Forks
Watchers

Graph realignment tools for structural variants

truvari

296
Stars
47
Forks
Watchers

Structural variant toolkit for VCFs

delly

405
Stars
136
Forks
Watchers

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

manta

388
Stars
151
Forks
Watchers

Structural variant and indel caller for mapped sequencing data

smoove

222
Stars
21
Forks
Watchers

structural variant calling and genotyping with existing tools, but, smoothly.

cuteSV

233
Stars
33
Forks
Watchers

Long read based human genomic structural variation detection with cuteSV

svtools

142
Stars
55
Forks
Watchers

Tools for processing and analyzing structural variants.