structural-variation topic
List
structural-variation repositories
Circle-Map
60
Stars
18
Forks
Watchers
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
Sniffles
517
Stars
87
Forks
Watchers
Structural variation caller using third generation sequencing
arriba
211
Stars
50
Forks
Watchers
Fast and accurate gene fusion detection from RNA-Seq data
paragraph
145
Stars
28
Forks
Watchers
Graph realignment tools for structural variants
truvari
296
Stars
47
Forks
Watchers
Structural variant toolkit for VCFs
delly
405
Stars
136
Forks
Watchers
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
manta
388
Stars
151
Forks
Watchers
Structural variant and indel caller for mapped sequencing data
smoove
222
Stars
21
Forks
Watchers
structural variant calling and genotyping with existing tools, but, smoothly.
cuteSV
233
Stars
33
Forks
Watchers
Long read based human genomic structural variation detection with cuteSV
svtools
142
Stars
55
Forks
Watchers
Tools for processing and analyzing structural variants.