population-genomics topic

Tools to work with variant call format files

knausb

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

EricArcher

rhierbaps: R implementation of hierBAPS

gtonkinhill

Estimation of per-individual inbreeding coefficients under a probabilistic framework

fgvieira

Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework

fgvieira

Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution. 2018;9:439–446.

alexkychen

the hierfstat package

jgx65

Population-wide Deletion Calling

kehrlab

PyPop: Python for Population Genomics

alexlancaster

Genome-wide scan for balancing selection using beta statistic

ksiewert