nf-core
Results
58
repositories owned by
nf-core
chipseq
173
Stars
141
Forks
Watchers
ChIP-seq peak-calling, QC and differential analysis pipeline.
sarek
344
Stars
380
Forks
Watchers
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
rnaseq
795
Stars
662
Forks
Watchers
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
tools
217
Stars
178
Forks
Watchers
Python package with helper tools for the nf-core community.
modules
256
Stars
643
Forks
140
Watchers
Repository to host tool-specific module files for the Nextflow DSL2 community!
atacseq
163
Stars
115
Forks
Watchers
ATAC-seq peak-calling and QC analysis pipeline
scrnaseq
172
Stars
148
Forks
Watchers
A single-cell RNAseq pipeline for 10X genomics data
fetchngs
126
Stars
67
Forks
Watchers
Pipeline to fetch metadata and raw FastQ files from public databases
test-datasets
88
Stars
322
Forks
Watchers
Test data to be used for automated testing with the nf-core pipelines
mag
183
Stars
98
Forks
Watchers
Assembly and binning of metagenomes