k-mer-counting topic

Code examples of fast and simple k-mer counters for tutorial purposes

lh3

Estimating k-mer coverage histogram of genomics data

bcgsc

counts k-mers, written in rust

suchapalaver

fast and comprehensive k-mer counting package

slowikj

MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data

pnnl

find large indels (in the blind spot between GATK/freebayes and SV callers)

brentp

A quality control tool for FASTQ files written in rust

fastqc-rs