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nextflow repositories
nextflow
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A DSL for data-driven computational pipelines
chipseq
173
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141
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ChIP-seq peak-calling, QC and differential analysis pipeline.
npm-groovy-lint
187
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60
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Lint, format and auto-fix your Groovy / Jenkinsfile / Gradle files using command line
sarek
344
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380
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Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
bactopia
365
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61
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A flexible pipeline for complete analysis of bacterial genomes
awesome-nextflow
549
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90
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A curated list of nextflow based pipelines
rnaseq
795
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662
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RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
tools
217
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178
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Python package with helper tools for the nf-core community.
modules
256
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643
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Repository to host tool-specific module files for the Nextflow DSL2 community!