nextflow topic
nextflow
A DSL for data-driven computational pipelines
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
npm-groovy-lint
Lint, format and auto-fix your Groovy / Jenkinsfile / Gradle files using command line
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
bactopia
A flexible pipeline for complete analysis of bacterial genomes
awesome-nextflow
A curated list of nextflow based pipelines
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
tools
Python package with helper tools for the nf-core community.
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!