variant-calling topic

Python library to facilitate genome assembly, annotation, and comparative genomics

tanghaibao

Viral genomics analysis pipelines

broadinstitute

De novo genome assembly and multisample variant calling

mcveanlab

PEPPER-Margin-DeepVariant

kishwarshafin

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

HKU-BAL

Bayesian haplotype-based mutation calling

luntergroup

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

vcflib

Sequana: a set of Snakemake NGS pipelines

sequana

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

aquaskyline

:scissors: :zap: Rapid haploid variant calling and core genome alignment

tseemann