variant-calling topic

Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.

karel-brinda

GitHub for the SIB courses NGS - Genome variant analysis

sib-swiss

Use an ensemble of variant callers to call variants from ATAC-seq data

aryarm

GATK4 Best Practice Nextflow Pipeline

oliverSI

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

gear-genomics

lh3

Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/

NVIDIA-Genomics-Research

Please consider using/contributing to https://github.com/nf-core/sarek

nf-core

Call and score variants from WGS/WES of rare disease patients.

nf-core

Efficient variant-call data storage and retrieval library using the TileDB storage library.

TileDB-Inc