variant-calling topic
List
variant-calling repositories
ococo
47
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3
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Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
NGS-variants-training
24
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7
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GitHub for the SIB courses NGS - Genome variant analysis
varCA
23
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8
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Use an ensemble of variant callers to call variants from ATAC-seq data
GATK4_Best_Practice
30
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28
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GATK4 Best Practice Nextflow Pipeline
indigo
30
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6
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Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
VariantWorks
43
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11
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Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/
deepvariant
40
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19
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Please consider using/contributing to https://github.com/nf-core/sarek
raredisease
73
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34
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Call and score variants from WGS/WES of rare disease patients.
TileDB-VCF
80
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13
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Efficient variant-call data storage and retrieval library using the TileDB storage library.