Brent Pedersen

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

brentp

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

brentp

genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

brentp

nim wrapper for htslib for parsing genomics data files

brentp

cython + htslib == fast VCF and BCF processing

brentp

annotate a VCF with other VCFs/BEDs/tabixed files

brentp

miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

brentp

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

brentp

genetic variant expressions, annotation, and filtering for great good.

brentp

structural variant calling and genotyping with existing tools, but, smoothly.

brentp