long-reads topic
pepper
PEPPER-Margin-DeepVariant
Clair3
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
NextDenovo
Fast and accurate de novo assembler for long reads
LINKS
⛓ Long Interval Nucleotide K-mer Scaffolder
abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
haslr
A fast tool for hybrid genome assembly of long and short reads
yacrd
Yet Another Chimeric Read Detector
long-read-pipelines
Long read production pipelines
pipeline-structural-variation
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data