local-assembly topic
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local-assembly repositories
lancet
153
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33
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Microassembly based somatic variant caller for NGS data
indelope
39
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1
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find large indels (in the blind spot between GATK/freebayes and SV callers)
SpecHLA
35
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9
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SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read da...