bioinformatics-pipeline topic
List
bioinformatics-pipeline repositories
scipipe
1.1k
Stars
72
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Robust, flexible and resource-efficient pipelines using Go and the commandline
reflow
957
Stars
55
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A language and runtime for distributed, incremental data processing in the cloud
SnapATAC
295
Stars
125
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Analysis Pipeline for Single Cell ATAC-seq
Roary
296
Stars
189
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Rapid large-scale prokaryote pan genome analysis
snp-sites
227
Stars
49
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Finds SNP sites from a multi-FASTA alignment file
Artemis
227
Stars
74
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Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
circlator
219
Stars
56
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A tool to circularize genome assemblies
ariba
155
Stars
52
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Antimicrobial Resistance Identification By Assembly
atac_dnase_pipelines
160
Stars
81
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ATAC-seq and DNase-seq processing pipeline
ngless
143
Stars
25
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NGLess: NGS with less work