nanopore-sequencing topic
iGenomics
The first app for Mobile DNA Sequence Alignment and Analysis
guppy_parameter_optimiser
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
NanoR
Nanopore data analysis in R
MGSE
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
deepsignal-plant
Detecting methylation using signal-level features from Nanopore sequencing reads of plants
score-assemblies
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
pipeline-nanopore-ref-isoforms
Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools
bacass
Simple bacterial assembly and annotation pipeline
LRBinner
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
RawHash
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computation...