methylation topic
List
methylation repositories
methylKit
191
Stars
95
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R package for DNA methylation analysis
nanopolish
545
Stars
160
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Signal-level algorithms for MinION data
deepcpg
142
Stars
68
Forks
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Deep neural networks for predicting CpG methylation
MethylDackel
154
Stars
42
Forks
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A (mostly) universal methylation extractor for BS-seq experiments.
Arioc
53
Stars
8
Forks
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Arioc: GPU-accelerated DNA short-read alignment
deepsignal
107
Stars
21
Forks
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Detecting methylation using signal-level features from Nanopore sequencing reads
remora
140
Stars
17
Forks
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Methylation/modified base calling separated from basecalling.
informME
25
Stars
8
Forks
Watchers
An information-theoretic pipeline for methylation analysis of WGBS data
cpgtools
37
Stars
11
Forks
Watchers
Python package to analyze DNA methylation data