methylation topic
methylKit
R package for DNA methylation analysis
nanopolish
Signal-level algorithms for MinION data
deepcpg
Deep neural networks for predicting CpG methylation
MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
Arioc
Arioc: GPU-accelerated DNA short-read alignment
deepsignal
Detecting methylation using signal-level features from Nanopore sequencing reads
remora
Methylation/modified base calling separated from basecalling.
princess
informME
An information-theoretic pipeline for methylation analysis of WGBS data
cpgtools
Python package to analyze DNA methylation data