methylation topic

List methylation repositories

methylKit

191
Stars
95
Forks
Watchers

R package for DNA methylation analysis

nanopolish

545
Stars
160
Forks
Watchers

Signal-level algorithms for MinION data

deepcpg

142
Stars
68
Forks
Watchers

Deep neural networks for predicting CpG methylation

MethylDackel

154
Stars
42
Forks
Watchers

A (mostly) universal methylation extractor for BS-seq experiments.

Arioc

53
Stars
8
Forks
Watchers

Arioc: GPU-accelerated DNA short-read alignment

deepsignal

107
Stars
21
Forks
Watchers

Detecting methylation using signal-level features from Nanopore sequencing reads

remora

140
Stars
17
Forks
Watchers

Methylation/modified base calling separated from basecalling.

informME

25
Stars
8
Forks
Watchers

An information-theoretic pipeline for methylation analysis of WGBS data

cpgtools

37
Stars
11
Forks
Watchers

Python package to analyze DNA methylation data