denovo topic
LSTM_Chem
Implementation of the paper - Generative Recurrent Networks for De Novo Drug Design.
molecular-VAE
Implementation of the paper - Automatic chemical design using a data-driven continuous representation of molecules
LSTM_peptides
Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.
bacass
Simple bacterial assembly and annotation pipeline
RamaNet
Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
Recycler
This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halp...
sirius
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
sirius-libs
sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java