contamination topic

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

DRL

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

benjjneb

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

khyox

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

Griffan

Detecting contamination in NGS data and multi-species analysis

StevenWingett

mtDNA Variant Caller

seppinho

Rapid and simple taxonomic profiling of genome and metagenome contigs

Arkadiy-Garber

RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al...

CMU-SAFARI

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

mpieva

The LM Contamination Index is a manually created database of contamination evidences for LMs.

hitz-zentroa