denovo-assembly topic

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

chhylp123

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

tseemann

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

lh3

De novo assembly based variant calling pipeline for Illumina short reads

lh3

A simple DSL2 workflow: tutorial

telatin

A WGS de novo assembler based on the FMD-index for large genomes

lh3

Standalone C library for assembling Illumina short reads in small regions

lh3

:hibiscus: reference-free transcriptome assembly for short and long reads

bcgsc

Learning to untangle genome assembly with graph neural networks.

lvrcek

lh3