oxford-nanopore topic

De novo clustering of long transcript reads into genes

ksahlin

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

philres

Nanopore sequence read simulator

bcgsc

PEPPER-Margin-DeepVariant

kishwarshafin

Fast and accurate de novo assembler for long reads

Nextomics

Long read based human genomic structural variation detection with cuteSV

tjiangHIT

Assembly and intrahost/low-frequency variant calling for viral samples

nf-core

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

kishwarshafin

Technology agnostic long read analysis pipeline for transcriptomes

mortazavilab

Predict plasmids from uncorrected long read data

andrewjpage