bacterial-genome-analysis topic

BSR-Based Allele Calling Algorithm

B-UMMI

Making whole bacterial genome sequencing data analysis easy

nmquijada

The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.

paulstothard

CGView is a Java package for generating high-quality, zoomable maps of circular genomes.

paulstothard

Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)

pmenzel

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

nf-core

ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.

npavlovikj

Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools

pmenzel

AMR/VF LGT focused bacterial genomics analysis workflow

beiko-lab