bacterial-genomes topic
prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
bactopia
A flexible pipeline for complete analysis of bacterial genomes
cgview_comparison_tool
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
sketchy
Genomic neighbor typing of bacterial pathogens using MinHash :rat:
SKA
Split Kmer Analysis
PHIST
Phage-Host Interaction Search Tool
Scaffold_builder
Combining de novo and reference-guided assembly with Scaffold_builder
cgview
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
gan
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria