Oxford Nanopore Technologies
Oxford Nanopore Technologies
bonito
A PyTorch Basecaller for Oxford Nanopore Reads
medaka
Sequence correction provided by ONT Research
fast-ctc-decode
Blitzing Fast CTC Beam Search Decoder
megalodon
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output...
taiyaki
Training models for basecalling Oxford Nanopore reads
tombo
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
pipeline-structural-variation
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
pipeline-transcriptome-de
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
pychopper
A tool to identify, orient, trim and rescue full length cDNA reads
wub
Tools and software library developed by the ONT Applications group