genome topic

List genome repositories

cellular-automaton

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🧫 A complex cellular automaton which simulates an entire ecosystem : universe, flora and fauna.

context

77
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8
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Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.

AI-Programmer

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264
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Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149

VariantSpark

138
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45
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machine learning for genomic variants

mosdepth

664
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99
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fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

abyss

300
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100
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:microscope: Assemble large genomes using short reads

deepvariant

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697
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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

gatk

1.6k
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575
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Official code repository for GATK versions 4 and up

IAMDinosaur

2.8k
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533
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🦄 An Artificial Inteligence to teach Google's Dinosaur to jump cactus

pyGeno

308
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52
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Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs