basecalling topic
bonito
A PyTorch Basecaller for Oxford Nanopore Reads
megalodon
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output...
remora
Methylation/modified base calling separated from basecalling.
rerio
Research release basecalling models and configurations
guppy_parameter_optimiser
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
dorado
Oxford Nanopore's Basecaller
pyguppyclient
Python client library for Guppy
poreCov
SARS-CoV-2 workflow for nanopore sequence data