indels topic
svaba
Structural variation and indel detection by local assembly
strelka
Strelka2 germline and somatic small variant caller
lancet
Microassembly based somatic variant caller for NGS data
manta
Structural variant and indel caller for mapped sequencing data
BayesTyper
A method for variant graph genotyping based on exact alignment of k-mers
PlatinumGenomes
The Platinum Genomes Truthset
indigo
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
16GT
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
gvanno
Generic human DNA variant annotation pipeline