cancer-genomics topic
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
pyGeno
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in e...
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
ideogram
Chromosome visualization for the web
pcgr
Personal Cancer Genome Reporter (PCGR)
tybalt
Training and evaluating a variational autoencoder for pan-cancer gene expression data
cbioportal
cBioPortal for Cancer Genomics