variant-analysis topic

Hexrays Toolbox - Find code patterns within the Hexrays ctree

patois

GitHub Satellite 2020 workshops on finding security vulnerabilities with CodeQL for Java/JavaScript.

githubsatelliteworkshops

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

biocommons

genetic variant expressions, annotation, and filtering for great good.

brentp

Arioc: GPU-accelerated DNA short-read alignment

RWilton

simuG: a general-purpose genome simulator

yjx1217

A modular annotation tool for genomic variants

KarchinLab

using all the bits for echt rapid variant annotation and filtering

brentp

The Platinum Genomes Truthset

Illumina

What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.

Illumina