genotyping topic

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

iprada

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

vcflib

Graph realignment tools for structural variants

Illumina

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

tseemann

A method for variant graph genotyping based on exact alignment of k-mers

bioinformatics-centre

Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates

cbg-ethz

Pileup biallelic SNPs from single-cell and bulk RNA-seq data

single-cell-genetics

Efficient genotyping bi-allelic SNPs on single cells

single-cell-genetics

Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

medvedevgroup

teepean