structural-variations topic
ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
SURVIVOR
Toolset for SV simulation, comparison and filtering
Sniffles
Structural variation caller using third generation sequencing
svaba
Structural variation and indel detection by local assembly
manta
Structural variant and indel caller for mapped sequencing data
Circle_finder
Micro DNA identification
panpop
Application of pan-genome for population
nb_distribution
novoBreak: local assembly for breakpoint detection in cancer genomes