debruijn-graph topic

Microassembly based somatic variant caller for NGS data

nygenome

An efficient index for the colored, compacted, de Bruijn graph

COMBINE-lab

MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

GATB

Compacted and colored de Bruijn graph construction and querying

algbio