crispr-analysis topic

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

lucapinello

List of software/websites/databases/other stuff for genome engineering

davidliwei

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

gear-genomics

Synthego ICE - Inference of CRISPR Editing software

synthego-open

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

gear-genomics

CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

Russel88

A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the...

nf-core

Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)

epigen

Flexible analysis of high-content CRISPR screening

ArcInstitute