snps topic

List snps repositories

lineage

144
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25
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tools for genetic genealogy and the analysis of consumer DNA test results

vcf2phylip

265
Stars
83
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Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

pyGeno

308
Stars
52
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Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

snippy

442
Stars
112
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:scissors: :zap: Rapid haploid variant calling and core genome alignment

strelka

350
Stars
102
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Strelka2 germline and somatic small variant caller

OSGenome

108
Stars
17
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An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

dna-traits

66
Stars
6
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A fast 23andMe genome text file parser, now superseded by arv

arv

116
Stars
5
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A fast 23andMe DNA parser and inferrer for Python

snps

91
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19
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tools for reading, writing, merging, and remapping SNPs

PHAT

17
Stars
2
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Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform