wgs topic
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
platon
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
sns
Analysis pipelines for genomic sequencing data
referenceseeker
Rapid determination of appropriate reference genomes.
SeqArray
Data management of large-scale whole-genome sequence variant calls (Development version only)
pan-Zea_construct
Workflow to construct linear representation of pan genome from deep WGS data and public assemblies
Cyrius
A tool to genotype CYP2D6 with WGS data
raredisease
Call and score variants from WGS/WES of rare disease patients.
sv-callers
Snakemake-based workflow for detecting structural variants in genomic data
daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0....