bacteria topic
List
bacteria repositories
GTDBTk
444
Stars
82
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GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
bakta
404
Stars
43
Forks
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Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
PPanGGOLiN
215
Stars
23
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Build a partitioned pangenome graph from microbial genomes
snippy
442
Stars
112
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:scissors: :zap: Rapid haploid variant calling and core genome alignment
nullarbor
131
Stars
37
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:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
Scoary
143
Stars
34
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Pan-genome wide association studies
platon
101
Stars
15
Forks
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Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
get_homologues
101
Stars
25
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GET_HOMOLOGUES: a versatile software package for pan-genome analysis
PopPUNK
81
Stars
16
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PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
pyseer
99
Stars
24
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SEER, reimplemented in python 🐍🔮