microbiology topic

Rapid comparison and dereplication of genomes

MrOlm

Build a partitioned pangenome graph from microbial genomes

labgem

microbiome R package

microbiome

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

oschwengers

An easy-to-use C++ application to count bacterial colonies (i.e. CFU).

qgeissmann

Rapid determination of appropriate reference genomes.

oschwengers

A genome visualization python package for comparative genomics

moshi4

hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance

ewissel

creating hybrid-gene phylogenetic trees for diversity analyses

JTFouquier

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches

vinuesa