pangenome topic

Build a partitioned pangenome graph from microbial genomes

labgem

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

eead-csic-compbio

Strain-level abundances estimation in metagenomic samples using variation graphs

kevsilva

Workflow to construct linear representation of pan genome from deep WGS data and public assemblies

songtaogui

A bioinformatic toolkit to align genome assemblies into pangenome graphs

neherlab

Renders a collection of sequences into a pangenome graph.

nf-core

Integrate multiple genome assemblies into a pangenome graph

AnimalGenomicsETH

Application of pan-genome for population

starskyzheng

A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.

iferres

PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples

SegataLab