atac-seq topic

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

seandavi

Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

loosolab

MACS -- Model-based Analysis of ChIP-Seq

macs3-project

ATAC-seq and DNase-seq processing pipeline

kundajelab

chromatin Variability Across Regions (of the genome!)

GreenleafLab

Benchmarking computational single cell ATAC-seq methods

pinellolab

Customizable workflows based on snakemake and python for the analysis of NGS data

maxplanck-ie

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

vanheeringen-lab

ATAC-seq peak-calling and QC analysis pipeline

nf-core

A toolkit for QC and visualization of ATAC-seq results.

ParkerLab