variant-calling topic

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

gear-genomics

A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

ShujiaHuang

GATK RNA-Seq Variant Calling in Nextflow

CRG-CNAG

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

HKU-BAL

Genome inference from a population reference graph

iqbal-lab-org

A method for variant graph genotyping based on exact alignment of k-mers

bioinformatics-centre

Long read production pipelines

broadinstitute

A tool for fast and accurate summarizing of variant calling format (VCF) files

czbiohub-sf

xHLA: Fast and accurate HLA typing from short read sequence data

humanlongevity

Toolkit for calling structural variants using short or long reads

kcleal