long-read topic

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

philres

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

chanzuckerberg

SALSA: A tool to scaffold long read assemblies with Hi-C data

marbl

Toolkit for calling structural variants using short or long reads

kcleal

Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.

vpc-ccg

A Python library to visualize and analyze long-read transcriptomes

mortazavilab

Minor Variant Calling and Phasing Tools

PacificBiosciences

BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper

PASSIONLab

Suite of tools for use in genome assembly and consensus. Work in progress.

jteutenberg

Demultiplexing and debarcoding tool designed for LR-Split-seq data.

fairliereese