gatk topic

Official code repository for GATK versions 4 and up

broadinstitute

This Snakemake pipeline implements the GATK best-practices workflow

snakemake-workflows

High performance data storage for importing, querying and transforming variants.

GenomicsDB

GATK RNA-Seq Variant Calling in Nextflow

CRG-CNAG

This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows...

gatk-workflows

Learning the Variant Call Format

davetang

GitHub for the SIB courses NGS - Genome variant analysis

sib-swiss

Exome/Capture/RNASeq Pipeline Implementation using snakemake

patidarr

Biopet docs

biopet

Whole Exome/Whole Genome Sequencing alignment pipeline

IARCbioinfo