de-novo-assembly topic
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de-novo-assembly repositories
long-read-pipelines
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Long read production pipelines
ggcat
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Compacted and colored de Bruijn graph construction and querying
BLEND
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BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applica...
Faucet
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This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye Rozov, Gil Goldshlager, Eran Halperin, and Ron Shamir